IL-7/IL7R axis dysfunction in adults with severe community-acquired pneumonia (CAP): a cross-sectional study | Scientific Reports - Nature.com
Abstract
Community-acquired pneumonia (CAP) is a worldwide leading cause of death. Recognized risk factors in some severe cases have not been identified. Lymphocytopenia has been frequently described in CAP. Since IL-7, membrane-bound receptor (IL7Rα;CD127) and soluble IL7Rα (sIL7R) are critical in lymphocytes homeostasis, in this work we aimed to evaluate the involvement of the IL-7/IL7Rα axis in the severity of adult CAP, since it has not been explored. The IL7Rα SNPs rs6897932, rs987106, and rs3194051 SNPs in IL7α were genotyped, the systemic expression of the IL7R gene, sIL7R, IL-7, and levels of peripheral IL7Rα+ T lymphocytes were quantified in 202 hospitalized CAP cases. rs3194051GG was more frequent in non-survivors than in survivors; rs987106TT was more frequent and rs3194051AA less frequent in patients at intensive care unit (ICU) than in those not admitted to ICU. IL7Rα gene expression was lower in non-survivors than in survivors, and in severe than in mild cases. CD3+CD127+ lymphocytes were lower in severe than in mild cases; in non-survivors than in survivors and in ICU than in non- ICU admitted cases. sIL7Rα plasmatic levels were higher in non-survivors than in survivors, and in severe than in mild cases. rs6897932CC, rs987106AA and rs3194051GG carriers showed the highest while rs6897932TT showed the lowest sIL7Rα levels. The AUC of sIL7Rα levels predicting 30-day mortality was 0.71. Plasma IL-7 levels were lower in ICU-admitted than in not ICU-admitted and in non-survivors than in survivors. No additional association was detected. In conclusion, rs3194051GG and rs987106TT IL7R genotypes were associated with a poorer prognosis. A significant association between sIL7R levels and SNPs of the IL7R gene is described for the first time in adult CAP. Increased plasmatic sIL7R could contribute to identifying adult CAP cases at risk of death.
Introduction
Community-acquired pneumonia (CAP) is a frequent worldwide cause of death1. In Chile, CAP is the seventh cause of death, particularly among the elderly2. Some CAP patients need to be admitted to intensive care unit (ICU) (10–20%)1, and some will die (5–10%)2. Advanced age and comorbidities (e.g. liver damage, cardiac insufficiency) are known risk factors which are included in clinical scores of severity such as the Pneumonia Severity Index (PSI) and CURB-651,3. However, these factors are not detected in some severe cases, and patients are wrongly classified4. A better understanding of the pathogenic factors is crucial to develop early biomarkers which could improve evaluation of severity risk at admission.
The immune response is substantial in the control and recovery of the infection. Lymphocytopenia has been described in CAP, probably related to T-cells and T-cell subsets5, and it has even been proposed as a predictive marker4. In CAP patients, it is hypothesized that depression of absolute peripheral blood T-cell counts represents the transfer of these cells towards the lung in order to be sequestered by protective mechanisms5. However, other factors could also be relevant.
Interleukin 7 (IL-7) plays a critical role in the homeostasis of the immune system, leading to the differentiation, proliferation, and survival of B, T, and natural killer (NK) cells6. In addition, patients with mutations in the extracellular domain of IL-7 receptor (IL7Rα or CD127) have severe combined immunodeficiency (SCID) of the T−B+NK+ cells and suffer recurrent and severe respiratory bacterial and viral infections from the early infancy7. IL-7 is constitutively produced and released by specialized non-hematopoietic cells from the thymus stroma, bone marrow, liver, spleen, and kidneys8. It is locally bound to heparan sulfate proteoglycans, either on the surface of stromal cells or in the extracellular matrix; consequently, levels of IL-7 in human plasma are low, exhibiting values < 10 pg/ml in healthy adults9,10.
This cytokine interacts with its unique α-receptor membrane-bound IL7R, forms a ternary complex with common γc receptor and trigger a signaling cascade which facilitates target gene transcription related with anti-apoptotic bcl-2 family9. IL7Rα is expressed on the lymphoid lineage and is required during early stage of T cell development and for proliferation and survival of T cells in the periphery7. In addition, a soluble IL7Rα (sIL7R or sCD127) is generated for alternative splicing, which provides a modulatory control mechanism regulating extracellular bioavailability of IL-76,10.
Genetic variation in and the expression of the IL7R gene, as well as increased expression of receptor/ligand genes, contribute to the pathogenesis of autoimmune and chronic inflammatory diseases such as type 1 diabetes and multiple sclerosis7. Single-nucleotide polymorphism (SNP) of IL7R gene, such as rs6897932, rs3194051 and rs987106, has been associated with clinical severity in multiple sclerosis, hepatitis C and human immunodeficiency virus infection11,12,13,14. Four common haplotypes of the IL7R gene have been described in exonic and intronic zones and found to be associated with differential levels of sIL7R. This isoform is produced by alternative splicing of the preRNAm that excludes exon 6 (encoding for the transmembrane domain) and generates a stop codon in exon-8 and a soluble protein12. Changes in IL-7 bioavailability due to decreased expression of the membrane isoform of IL7Rα and increased soluble isoform levels have been proposed10. In addition, high plasma levels of this cytokine have been associated with lethality in sepsis15.
Recent studies support a critical role for IL-7 and its receptor in immunosenescence, and while low expression of the IL7Rα in the elderly was associated with a better metabolic profile, higher expression of IL7Rα was linked with protection from mortality6. Since age is a known risk factor of CAP severity and the expression of IL7Rα decreases with age, but not IL-7 levels6, it is relevant to explore these parameters in adults with CAP. Moreover, since IL-7 therapy could enhance and broaden the immune responses it could be used as severity biomarkers.
The aim of this study was evaluate the association of the components of IL-7/IL7Rα axis with clinical severity in adults with CAP, assessing the allelic and genotypic frequency of certain SNPs, expression of the IL7R gene, plasma concentration of soluble IL7R, IL-7 and the proportion of lymphocytes with membrane bound IL7R.
Methods
Patients and study design
In this cross-sectional study, 202 patients aged ≥ 18 years old hospitalized for CAP were enrolled in three hospitals (Clínico Universidad de Chile, de Infecciosos Dr. Lucio Córdova Hospital, and Complejo Hospitalario San José) in Santiago, Chile from May 2017 to August 2019. CAP was defined as the presence of acute respiratory symptoms for less than one week plus a chest X-ray display new pulmonary infiltrates2,4. Patients with immunocompromising conditions (i.e., organ transplant, active treatment for cancer, human immunodeficiency virus infection, immunosuppressive and, or steroids therapy), hemodialysis and hospitalizations within 30 days preceding enrollment were excluded. Clinical and epidemiological data of the all patients were obtained from medical records, including age, sex, comorbidities (i.e., hypertension; diabetes mellitus; chronic obstructive respiratory disease; chronic liver disease (chronic liver damage suggested by abdominal ultrasound imaging and/or computed tomography scan); chronic kidney damage (serum creatinine level ≥ 2 mg/dL); cardiac insufficiency (heart failure with reduced ejection fraction (≤ 45%)); neurologic disease (nervous system disorders including epilepsy, Parkinson's Disease, Alzheimer's Disease, and stroke); smoking; alcohol consumption (> 80 g per day yes/no); clinical presentation (fever, respiratory symptoms); chest radiographic patterns (consolidation and pleural effusion), and laboratory parameters (i.e., hemogram, plasmatic concentration of glucose, sodium and blood urea nitrogen).
The severity of patients was evaluated according to PSI3 and CURB-651 clinical scores applied during the first 48 h after enrollment: IV and V groups of PSI and ≥ 3 of CURB-65 score were considered as severe, while I and II groups of PSI and ≤ 2 of CURB-65 score were considered as mild. Several outcome variables were analyzed: death up to 30 days post- discharge, admission to ICU, use of mechanical ventilation (MV), and supplemental oxygen therapy. Basal values of different parameters were determined in 22 asymptomatic adults without respiratory infection at least 45 days before enrollment and with no pathogen detected in microbiological screening. The study was approved by the Committee on Research in Human Beings of Faculty of Medicine, University of Chile; the Ethics Committee of Clínico U. Chile Hospital, and the Ethics Committees of the South and North Metropolitan Health Service. Written informed consent was provided by all patients at enrolment. The study was performed in accordance with the principles of the Declaration of Helsinki.
Microbiological study
An immunochromatographic test (Binax NOW, Portland, Oregon, USA) was used to detect Streptococcus pneumoniae and L. pneumophila serogroup 1 antigens in urine. For the detection of other respiratory pathogens, total genetic material was extracted from nasopharyngeal aspirate/swabs samples (300 µL) by Favorprep™ Viral Nucleic Acid Extraction kit (Favorgen®), according to manufacturer's instructions, and after was quantified in an EPOCH® spectrophotometer. Human respiratory viruses such as respiratory syncytial virus, influenza A and B viruses, adenovirus, metapneumovirus, bocavirus, coronavirus (HCoV 229E; HCoV OC43, HCoV-NL63, and HCoV-HKU1), parainfluenza virus, rhinovirus/enterovirus, and bacterias (Chlamydophila pneumoniae, Mycoplasma pneumoniae and Legionella pneumophila) were detected by Respiratory Multi well system r-gene Real Time RT-PCR kit Argene®, according to the manufacturer's instructions in a MIC® thermocycler (BMS®).
SNPs genotyping
Three single nucleotide polymorphisms located at the IL7R gene were evaluated: rs987106 in an intronic region (c.801-21 A > T), rs6897932 in exon 6 (transmembrane region; c.731 C > T; p.Thr244Ile), and rs3194051 in exon 8 (intracellular region; c.1066 A > G; p.Ile356Val).
Only Chilean people were studied. This population is over 90% admixture Caucasian and South amerindian people16.
Extraction of genomic DNA
Genomic DNA was extracted from venous blood (250 μl) with EDTA as anticoagulant using Exgene™ Blood SV kit (GeneAll®) according to the manufacturer instruction. All extracted DNA samples were treated with RNase A (Thermo Scientific, USA) and quantified by spectrophotometry (Epoch (BioTek®). Aliquots (5 ng/μl) were prepared and stored at −20 °C.
Primers design
Primer sets for the amplifications were designed based on the sequence NG_009567.1 using the software Beacon Designer 8.02 (PREMIER Biosoft, int). The specificity of primers was confirmed on Primer-BLAST (http://www.ncbi.nlm.nih.gov/tools/primer-blast). The primer set for each SNP were: rs6897932: HD: CCACAATCTATTCTTGCTTTCCA and HR: 5´-CCAACAGAGCGACAGAGA-3´; rs987106: 801A-PH: 5´-CTGCCATTCACTTCATCTAT-3´, 801 T-PH: 5´-CTGCCATTCACTTCATCTTT-3´ and 801-PR: 5´-ATGTTCCAGAGTCTTCTTATG-3´; rs3194051: HD: 5´-AACTGCCCATCTGAGGAT-3´ and HR: 5´-GCATGTGAGGGATGAATCT-3´.
PCR amplification and genotyping
SNPs were independently analyzed. rs6897932 and rs3194051 SNPs were genotyped using in-house PCR-HRM assay validated by direct sequencing. The PCR-HRM reaction was prepared in a final volume (10 μL) which includes DNA template (10 ng), KAPA HRM FAST Master Mix (5 μl) (KAPA HRM FAST kit; Kapabiosystems©), MgCl2 (2.5 mM) and each primer set (0.25 μM). Amplifications were performed in an ECO™ Real-Time PCR System Thermocycler (Illumina®). PCR amplifications were performed with initial denaturing at 95 °C for 2 min, and subsequently subjected to 45 cycles: 95 °C for 5 s (denaturalization), 56 °C for 15 s to rs6897932 or 55 °C for 20 s to rs3194051 (annealing and extension). After PCR amplification, the HRM was carried out over the range 55–95 °C rising at 0.1 °C/s. The genotype of each sample was determined by Eco software 4.1.02.0.
Allele-specific PCR was applied for genotyping SNP rs987106, using a specific forward primer to each allele (A or T) and a common reverse primer as described above in "Primer design". Two reactions were performed for each sample. Final volume (10 μl) was prepared with DNA template (10 ng), KAPA SYBR FAST Master Mix (5 μl) (KAPA SYBR FAST kit; Kapabiosystems©), and each primer set (0.2 μM) in an ECO™ Real-Time PCR System Thermocycler (Illumina®). PCR amplification was performed at 95 °C for 2 min, and 45 cycles: 95 °C for 5 s, 61 °C for 15 s and 72 °C for 3 s.
IL7R expression by RT-qPCR
Blood samples were centrifuged at 2000 rpm for 5 min, and the RNA was extracted in 800 μl of the precipitate with TRIzol™ reagent (Invitrogen, Thermo Fisher Scientific), according to the manufacturer instructions. Extracted RNA was treated with TURBO DNA-free™ kit (Ambion®, Life Technologies) and its concentration was determined by spectrophotometry (Epoch®, Biotek Instruments). Relative gene expression was determined by real time RT-PCR assay based on SYBR-Green detection. TUBB was used as gene for normalization17. cDNAs were obtained from 2 µg RNA using M-MLV Reverse Transcriptase (Promega®) and random primers (Promega®), according to the manufacturer's guidelines. Primers to IL7R mRNA were designed using the Genbank sequence NM_002185.4 and the software Beacon Designer 8.02 (PREMIER Biosoft®) (F: 5'-CAGCAATGTATGAGATTA-3'; R: 5'-ATGGTTAGTAAGATAGGAT-3'). The PCR reaction was performed using the KAPA SYBR© Fast qPCR (Kapa Biosystems®) with cDNA (2 µl) in a final volume (10 µl), according to the Eco™ Real-Time PCR system (Illumina®) protocol. PCR amplification was performed at 95 °C for 3 min, and 45 cycles: 95 °C for 3 s, 53 °C for 15 s and 72 °C for 3 s followed by the melting curve (55–95 °C). Gene expression fold changes (FC) were determined using the 2−ΔΔCTmethod18. The group used as control is indicated in each analysis.
Quantification of membrane bound IL7Rα (CD127) expression on T cells and of peripheral T lymphocytes by flow cytometry
Blood samples were collected in EDTA tubes. Peripheral blood leukocytes were isolated by centrifugation (Boeco® Centrífuge) and stained with BD Horizon Brilliant Stain Buffer (563794 BD Pharmigen™) and BD Pharmigen Stain Buffer (FBS) (554656 BD Pharmigen™). Cells were incubated with specific antibodies, and later with 1× BD FACS Lysing Solution (641776 BD Pharmigen™). For the surface staining of peripheral blood mononuclear cells (1 × 106), the followings antibodies of BD Pharmigen™ were used: APC mouse anti-human CD3 (555342), PerCPCy5.5 mouse anti-human CD4 (341654), FITC mouse anti-human CD8 (555634) and BV421 mouse anti-human CD127 (562436). Isotype-matched controls were used in all experiments: APC mouse IgG2a (555576), PerCPCy5.5 mouse IgG1 (550795), FITC mouse IgG1 (555748) and BV421 mouse IgG1 (562438). Dead cells were excluded by BD Horizon™ Fixable Viability Stain 780 (565388). Samples were acquired on the FACSCANTO™ II (BD Biosciences©). The data were analyzed using the FlowJo10.4® software.
Quantification of soluble IL7R (sIL7R) by ELISA
Soluble IL7Rα in plasma was measured using Human IL-7 alpha ELISA (RayBiotech®) following manufacturer's instruction.
Quantification of cytokines by Luminex© technology
Plasma IL-7 was quantified by HCYTOMAG-60K kit (Milliplex MAP human cytokine/chemokine magnetic bead panel, MERCK®). The assay was run on MAGPIX® (Luminex©) with xPONENT software. Data were analyzed using a five-parameter logistic curve with Milliplex analyst software.
Statistical analysis
Continuous variables were described as median and interquartile range (IQR) and categorical variables as frequency and percentage. Differences between groups were performed using the Chi square test for categorical data, and Student´s t and Mann–Whitney test for continuous variables, as appropriate. Parameters were compared according to predictor variables age, sex, and comorbidities. Days of illness were also analyzed in some parameters—as indicated in "Results"—because the immune response is dynamic over time. The area under the receiver operating characteristic curve (AUC) for predicting 30-day mortality and admission to ICU was calculated for plasmatic sIL7Rα. The association for each SNP of the IL7R with severity score and clinical outcomes (supplemental oxygen therapy, days of illness, ICU admission and death) in adults with CAP was evaluated through logistic regression model: crude (model 1), adjusted by age and sex (model 2) and adjusted by age, sex, and severity score (model 3). Odds ratios (ORs) and respective 95% confidence interval (CI) were reported as measure of associations. Hardy–Weinberg equilibrium of each SNP and association studies were tested using Armitage's trend test (http://ihg.gsf.de/cgi-bin/hw/hwa1.pl). Alleles, genotypes and haplotype analysis were carried out with the Unphased 3.1.5 software19, as previously described19. Statistical significance was set at P value < 0.05. Data were analyzed using Stata 16.0, GraphPrism 8.4.2, and SPSS V25.0 software.
Ethics approval and consent to participate
The study was approved by the Ethics committees at the Clínico Universidad de Chile Hospital (Act N12), the Universidad de Chile Facultad de Medicina (Act N009), and the South Metropolitan Health Service (Act N 142/2017). Written informed consent was obtained from each participant.
Results
Characteristics of studied population
Table 1 shows the general characteristics of 202 patients hospitalized with CAP. The clinical outcome was mechanical ventilation in 41 (20.3%) cases, and shock in 22 (10.9%) patients. Severe cases and comorbidities were more frequent in older patients (≥ 65 years) than in younger patients (p ≤ 0.02). The characteristics of the 100 women and 102 men were similar, except for higher frequency of asthmatics and mild cases (by PSI) in female than in male patients (13% vs 5%, p = 0.04; 30% vs 18%, p = 0.04) (see Supplementary Table 1 online).
Respiratory pathogens were detected in 123 (61%) of 202 cases (Table 1). Viruses most frequently detected among 91 patients with viral detection were: influenza (37/91 cases; 40.7%) and rhinovirus (27 cases, 29.7%), and S.pneumoniae was the most frequently detected bacteria, in 42/55 cases (76.4%).
The median age of 22 asymptomatic adults without respiratory infection was 54.0 years (IQR: 43–63); 7 (36.8%) were men; 3 (15.8%) have co-morbidities (one type 2 Diabetes Mellitus, one asthma and one hypothyroidism); one was smoker (4.8%) and no one had alcohol consumption > 80 g/day.
IL7Rα genetic variants
Allelic and genotypic frequencies
Several SNPs in the IL7Rα gene have been associated with immune and infectious diseases. In this study, three SNPS—rs6897932 (c.731-C > T), rs987106 (c.801–21-A > T) and rs3194051 (c.1066-A > G)—and their association with the severity of CAP were explored. Carriers of the rs987106TT and the rs3194051AG genotypes were more frequent in patients hospitalized in ICU (Table 2). The G allele in this last SNP is a risk allele according to Armitage's test for association studies, with an odds ratio of 2.97 (p = 0.0003) between ICU-no ICU groups and of 2.52 with respect to the A allele between severe/mild cases according to PSI (p = 0.004). In addition, the rs3194051GG genotype was also more frequent in non-survivors than in survivor patients (Table 2). No differences were identified in the SNP rs6897932, except a higher number of carriers of the C allele and CC genotype among severe than in mild patients according to CURB-65. On the other hand, carriers of the rs3194051 AA genotype were significantly more frequent in patients who did not were admitted to the ICU (Table 2).
Multivariable logistic regression models were performed to assess if the genotype GG of rs3194051 was associated with the severity of illness compared to the other genotypes (GA, AA, or any of them (AA/GA)). rs3194051GG had a significant positive relationship with admission to ICU even in models adjusted by age, sex, and severity (Table 3). rs3194051GG was also positively associated with dead in relation to any of other genotypes in adjusted models by age and sex, but it did not reach statistical significance when severity was included in the model. These analyzes were not possible with the PSI score because of the small sample size.
According to age and sex, carriers of the C allele and CC genotype in the rs6897932 and the A allele in the rs987106 were significantly more frequent in older than in younger patients. This difference remained significant among men, but not among women (see Supplementary Table 2 online). In addition, the rs6897932CC and rs987106AA genotypes were more frequent in females than in males, but only in < 65 years patients. No differences were detected in the SNP rs3194051.
IL7R haplotypes
The association between the haplotypes in the three SNPs of the IL7Rα gene and CAP severity was studied. The CAA allelic combination (rs6897932—rs987106—rs3194051) was less frequent in patients admitted to the ICU; the CTA haplotype was associated with dead and the CTG haplotype with admission at ICU (Table 4). The TTA haplotype was associated with mild illness, but only when CURB-65 score is applied.
Since age and comorbidities are factors associated to severity also were analyzed. Certain haplotypes were associated with any comorbidities and CAA allelic combination was more frequent in adults over 65 years (Table 4).
Analysis of the genotypes of all the SNPs studied showed that the CC-TT-AG combination was significantly more frequent in severe cases than in mild cases, and the CC-TT-GG genotype in the severe by CURB-65 and non-survivors patients (Table 5). So, G allele in the SNP rs3194051 is associated with severity of the CAP in adults.
IL7Rα gene expression
IL7Rα gene expression was lower in 13 non-survivors adults than in 112 survivors with CAP (FC: 0.26 vs 1.0; p = 0.01), but similar between 22 patients in ICU and 107 cases without admission to ICU (p = 0.6). According to severity of CAP defined by clinical scores, gene expression was lower in 57 severe cases than in 39 mild cases by PSI (FC: 0.27; p = 0.009), but similar between cases classified by CURB-65.
In relation to genotypes of the SNPs studied, expression of IL7Rα gene was significantly lower in 58 carriers of the CT genotype than in 54 carriers of the CC genotype of the rs6897932 (FC: 0.28; p = 0.01). Although differences were not statistically significant, expression was lower in 66 carriers of the AT and 28 of the TT genotypes than in 35 carriers of the AA genotype in the rs987106 (FC: 0.33 and 0.25, respectively) (p > 0.1) and higher in 30 carriers of the AG genotype than in 97 carriers of the AA genotype in the rs3194051 (FC: 1.79; p = 0.5).
IL7Rα gene expression was lower in 81 adults over 65 years old with CAP than in 48 adults < 65 years (FC: 0.55 vs 1.0, respectively), and was higher in 62 men than in 67 women (FC: 2.31 vs 1.0, respectively), although a statistical significance was not gotten. No differences were found comparing days of illness or pathogen detected.
Proportion of CD3+ lymphocytes
Given the connection between IL7R axis and T lymphocytes, these subpopulations were studied in 68 CAP and in 15 asymptomatic adults by flow cytometry. Proportion of the CD3+ lymphocytes was significantly lower in patients (median: 45.3% vs 55.1% [IQR: 31.8–59.58 and 46.5–66.5]) (Fig. 1A), and in adults ≥ 65 years old than in < 65 years old (median: 41.4% vs 54.3% [IQR: 30.5–54.5 and 39.9–65.9]) (p = 0.03), difference that remained statistically significant only in women (median: 45.1% vs 62.9% [IQR: 31.8–60.6 and 53.4–66.5]( (p = 0.007) (Fig. 1B). Also CD3+TL was lower in non-survivors patients than in survivors (median: 35.3% vs 46.6% [IQR: 29.9–48.2 and 35.2–60.8; p = 0.1), but statistical significance was not reached. CD3+ lymphocytes proportion was lower in severe patients than in mild cases according to PSI (median: 39.9% vs 59.0% [IQR: 30.3–58.6 and 50.1–66.5]; p = 0.04) (Fig. 1C), and similar by CURB-65 (median: 49.9% vs 50.4% [IQR: 30.4–59.6 and 36.0–63; p = 0.2).
Systemic CD3+ lymphocytes in CAP and asymptomatic adults (ASN) (A), according to age, sex (B), and outcome (C). Data are shown as median and 95% CI. P values were obtained by Mann–Whitney test.
Expression of membrane-bound IL7Rα (CD127) on T lymphocytes
T lymphocytes expressing α-receptor membrane-bound IL7Rα (CD127) were studied by flow cytometry. Significantly lower proportion of the CD3+CD127+ lymphocytes was recorded in patients as compared to asymptomatic adults (median: 30.5% vs 37.5% % [IQR: 22.4–37.8 and 32.0–52.7]; p = 0.01) (Fig. 2A). Similarly, the proportion was significantly lower in severe patients than in mild cases classified by both PSI (median: 25.6% vs 49.1% [IQR: 21.7–35.3 and 37.1–54.7]) and CURB-65 (25.0% vs 36.4% [IQR: 18.3–36.4 and 23.4–51.5]) (p ≤ 0.02). Although statistical significance was not reached, CD3+CD127+ lymphocytes also were lower in non-survivors patients than in the survivors (median: 24.8% vs 32.6% % [IQR: 21.0–32.3 and 22.5–40.6]; p = 0.2) (Fig. 2B).
Systemic CD3+CD127+ lymphocytes in CAP and asymptomatic adults (ASN) (A), according to age, sex (B) and outcome (C). Data are shown as median and 95% CI. P values were calculated by Mann–Whitney test.
Significantly lower proportion of the CD3+CD127+ lymphocytes was recorded in older than in younger patients (median: 25.4% vs 39.4% [IQR: 21.1–34.9 and 31.4–51.5]; p = 0.0009), being also significant among women (median: 24.8% vs 47.6% [IQR: 20.0–32.2 and 40.7–55.8]; p < 0.0001) (Fig. 2C).
There were no significant differences according to genotypes (Fig. 3A–C) (rs3194051GG was excluded because only one patient could be analyzed) nor pathogen detected: 40 viral cases (median: 32.0% [IQR: 23.6–37.2]) and 62 patients with bacterial detection (24.6% [IQR: 16.2–39.7]) (p = 0.4).
CD3+CD127+ lymphocytes in blood from adults with CAP according to SNP. Data are shown as median and 95% CI. p > 0.1, by t test.
The mean fluorescence intensity of CD3+CD127+ lymphocytes was determined as an estimate of the number of receptors per cell, being significantly higher in the 11 non-survivors patients than in the 56 survivors (median: 5599 vs 3377 [IQR: 3741–7076 and 2624–4482]; p = 0.001). No differences were detected between 15 patients in ICU and 48 without admission to ICU (median: 3269 vs 3688 [IQR: 2401–3838 and 2918–5594]; p = 0.1); between 45 severe patients and 10 mild cases according to PSI (median: 3563 vs 3085 [IQR: 2890–4848 and 2371–4212]; p = 0.2); between 32 severe patients and 36 mild cases according to CURB-65 (median: 3593 vs 3367 [IQR: 2886–5355 and 2684–4736]; p = 0.3) and between 18 older adults and 50 younger (median: 3369 vs 3557 [IQR: 2565–4695 and 2892–4874]; p = 0.5).
Although expression of membrane bound IL7Rα (CD127) in CD4+ and CD8+ T cells was quantified in few patients, a significant lower proportion of CD4+CD127+ cells, but no of CD8+CD127+ cells, were detected in severe cases as compared to mild cases classified by PSI (Fig. 4A,B).
Systemic CD4+CD127+ (A) and CD8+CD127+ (B) T lymphocytes in CAP adult according to severity by PSI. Data are shown as median and 95% CI. P values were obtained by t test.
Quantification of soluble IL7R
Soluble IL7R (sIL7R) is associated with the homeostasis of the IL-7/IL7R axis. In this study, plasmatic levels of sIL7Rα were higher in asymptomatic adults than in adults with CAP, although statistical significance was not developed (median: 26.3 vs 22.4 ng/ml [IQR: 23.8–38.1 and 15.2–33.4; p = 0.09) (Fig. 5A). Also levels of sIL7R were significantly higher in adults ≥ 65 years than in patients < 65 years (median: 24.6 vs 17.5 [IQR: 16.9–35.0 and 11.8–25.4]; p = 0.001) (Fig. 5B). The non-survivors patients showed significantly higher sIL7R concentrations than the survivors (median: 30.4 vs 20.9 ng/ml [IQR: 21.6–46.4 and 14.4–29.3]; p = 0.0003). The same happened in the severe cases with respect to mild cases according to PSI (median: 25.7 vs 17.1 [IQR: 16.2–38.2 and 12.8–22.5]; p = 0.0008) and CURB-65 (median: 27.9 vs 17.5 [IQR: 21.2–40.4 and 13.4–24.5]; p < 0.0001) (Fig. 5C). sIL7R also was higher in the 29 patients with mechanical ventilation than in 124 without MV, but the difference was not significant (median: 29.4 ng/ml vs 21.39 ng/ml; p = 0.05).
Plasmatic soluble IL7R from asymptomatic and CAP adults (A), according to age, sex (B) and outcome (C). Data are shown as median and 95% CI. P values were calculated by Mann–Whitney test.
Significant differences in levels of sIL7R were detected in the patients according to the genotypes of the three SNP studied. Thus, the highest levels were detected in carriers of rs6897932CC, rs987106AA, and rs3194051AA genotypes; while the lowest concentrations were observed in adults with rs987106TT, rs3194051AA genotypes, and the lowest of all, the rs6897932TT carriers (Fig. 6).
Soluble IL7R according to the genotypes of the three SNPs in adult CAP. Median, 25–75% percentile, minimum and maximum are indicated. P values were obtained by Mann–Whitney test, (*) p < 0.05, (**) p < 0.01, (***) p < 0.001, (****) p < 0.0001.
An evaluation of the predictive capacity of the plasmatic sIL7R levels was performed by an area-under-the curve (AUC) analysis. AUC was 0.71 (SE 0.05; 95% CI: 0.60–0.81) for prediction of 30-day mortality and 0.48 (SE 0.06; 95% CI: 0.36–0.60) for admission at ICU. Regarding sIL7R values, the best threshold calculated on the basis of minimum d (minimum distance between ROC curve and point of sensitivity and specificity = 1) was 25.04 ng/ml. For this cutoff value, sensitivity was 73.3%, specificity was 66.1%, 67.6% was classified correctly, LR ( +) was 2.1642 and LR (−) was 0.4033. Among 113 CAP adults with sIL7R levels above 25.04 ng/ml, 85 (75.2%) were ≥ 65 years, 30 (26.5%) were admitted to ICU, 75 (66.4%) were classified as severe by PSI and 50 (44.2%) by CURB-65 and, whereas only 53 (59.6%), 8 (8.98%), 35 (39.3%) and 18 (20.2%) were in the 89 cases with levels below this cut-off value, respectively (p < 0.02).
Moreover, to determine whether plasma concentrations of the sIL7R correlate with the level of membrane-bound receptor expression on T cells (CD3+CD127+ lymphocytes), ratio of membrane to soluble receptor was evaluated, being significantly lower in severe than in mild cases by both PSI and CURB-65, and in adults ≥ 65 years than in adults < 65 years. Although not statistically significant, ratio was also lower in non-survivors than in survivor patients and in cases in ICU than in without admission to ICU (Table 6).
Although the linear regression model showed no relationship between sIL7R concentration and days of illness (coefficient −0.02; 95% CI: −0.06 to 0.014; p = 0.29), given sIL7R levels were significantly higher in 95 patients with less 7 days of illness than in 57 cases with > 7 days (median: 23.8 vs 19.4 ng/ml; p = 0.03), the analyses were repeated excluding the latter cases. Significant differences remained in all comparisons previously shown, except in higher levels of sIL7R between carriers of AG vs AA and GG vs AA genotypes in the rs3194051. On the contrary, the greatest levels of sIL7R in carriers of CC vs CT genotypes in the rs6897932 and AA vs AT genotypes in the rs987106 achieved statistical significance (see Supplementary Table 3 online).
Concentration of IL-7
Since IL-7 activates its receptor and plays a transcendental role in T cell homeostasis, IL-7 levels were evaluated. Significantly higher levels of plasmatic cytokine IL-7 were detected in adults with CAP than in asymptomatic adults. Levels were lower in patients in ICU, with oxygen therapy and in the non-survivors patients, although the last difference was not statistically significant (Table 7). No significant differences were detected in IL-7 levels by gender, age, or severity according to both clinical scores (Table 7), or by genotypes either (see Supplementary Table 4 online).
No correlation between plasmatic IL-7 and sIL7R concentrations was found in 123 CAP cases studied (Spearman's rank correlation coefficients, r = −0.11; 95% IC: −0.2895 to 0.07025; p = 0.21); not with LTCD3+ (r = 0.11; 95% IC:−0.1433 to 0.3543; p = 0.3); CD127+ (r = 0.10; 95% IC: −0.1546 to 0.3576; p = 0.40), or age either (r = −0.0663; p = 0.3).
According to pathogen detected, IL-7 level was lower in 26 patients with bacteria than in 57 viral cases (median: 3.6 vs 5.3 pg/ml [IQR: 1.8–5.3 and 3.4–7.6]; p = 0.01), while both viral and bacterial cases were similar to 19 patients with mixed infections (median: 4.3 pg/ml [IRQ: 1.8–9.6]; p > 0.4).
Discussion
To the best of our knowledge, this is the first study of the genic/protein expression IL-7/IL7R axis in adults with CAP, looking for a new potential severity factor. High plasmatic levels of soluble receptor IL-7 (sIL7R) and two IL7R gene polymorphisms studied were associated to CAP severity. Thus, the non-survivors patients had higher plasmatic levels of sIL7R than the recovered patients, as well as non-significant lower levels of both the genic expression of IL7R and IL-7, and of circulating CD3+TL and CD3+CD127+TL. These results agree with previous reports...
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